Napari ExoDeepFinder
A napari plugin for the ExpDeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
A napari plugin for the ExoDeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
The documentation for users is available here.
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation¶
- Create a conda environment with python 3.10:
conda create -n napari-exodeepfinder python=3.10 - Activate the environment:
conda activate napari-exodeepfinder - Install napari:
pip install napari-exodeepfinder
Contributing¶
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License¶
Distributed under the terms of the GNU GPL v3.0 license, "napari-exodeepfinder" is free and open source software
Issues¶
If you encounter any problems, please file an issue along with a detailed description.
Supported data:
- Information not submitted
Plugin type:
GitHub activity:
- Stars: 0
- Forks: 0
- Issues + PRs: 5
GitHub activity:
- Stars: 0
- Forks: 0
- Issues + PRs: 5
Requirements:
- exodeepfinder>=0.2.5
- numpy>=1.26.4
- magicgui>=0.8.2
- QtPy>=2.4.1
- napari[all]>=0.4.19
- scikit-image>=0.22.0
- typing>=3.7.4.3
- pandas>=2.2.2
- lxml[html_clean]>=5.2.2
- pillow>=10.3.0
- h5py>=3.11.0
- mrcfile>=1.5.0
- scipy>=1.13.1